SNP Profiles of UF 29   View Data

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 Key

 1234567891011121314
_Input profile
ACACAGACAAGGAGCCATAGAGAGAAAC
1._GC-01-020-1-20
ACACAGACTTCCAGGGATCTAGCTTTGT
2._GC-01-020-1-20
ACACAGACTTCCAGGGATCTAGCTTTGT
3._GC-01-020-1-20
ACACAGACTTCCAGGGATCTAGCTTTGT
4._GC-01-020-1-20
ACACAGACTTCCAGGGATCTAGCTTTGT
5._GC-01-020-1-20
ACACAGACTTCCAGGGATCTAGCTTTGT
6._GC-01-020-1-20
ACACAGACTTCCAGGGATCTAGCTTTGT
7._GC-01-020-1-20
ACACAGACTTCCAGGGATCTAGCTTTGT
8._GC-01-020-1-20
ACACAGACTTCCAGGGATCTAGCTTTGT
9._GC-01-020-1-20
ACACAGACTTCCAGGGATCTAGCTTTGT
10._GC-01-020-1-20
ACACAGACTTCCAGGGATCTAGCTTTGT
11._GC-01-020-1-20
ACACAGACTTCCAGGGATCTAGCTTTGT
12._UF_29
______AG_AT_____
13._GC-01-020-1-20
ACACAGACTTCCAGGGATCTAGCTTTGT
14._GC-01-020-1-20
ACACAGACTTCCAGGGATCTAGCTTTGT
15._UF_29
_____CCAG_AT_____
16._UF_29
_____CCAG_AT_____
17._UF_29
_____CCAG_AT_____
18._UF_29
_____CCAG_AT_____
19._UF_29
_____CCAG_AT_____
20._UF_29
_____CCAG_AT_____
21._UF_29
_____CCAG_AT_____
22._UF_29
_____CCAG_AT_____
23._UF_29
_____CCAG_AT_____
24._UF_29
_____CCAG_AT_____
25._UF_29
_____CCAG_AT_____
26._UF_29
_____CCAG_AT_____
27._UF_29
_____CCAG_AT_____
28._UF_29
_____CCAG_AT_____
29._UF_29
_____CCAG_AT_____
 1516171819202122232425262728
_Input profile
AAACAGAAGGAGAGCCAGCGAGACAGAG
1._GC-01-020-1-20
TTGTCTTTGGCTCTCCCTCGAGGTCTCT
2._GC-01-020-1-20
TTGT_TTGGCTCTCCCTCGAGGTCTCT
3._GC-01-020-1-20
TTGTCTTTGGCTCTCCCTCGAGGTCTCT
4._GC-01-020-1-20
TTGTCTTTGGCTCTCCCTCGAGGTCTCT
5._GC-01-020-1-20
TTGTCTTTGGCTCTCCCTCGAGGTCTCT
6._GC-01-020-1-20
TTGTCTTTGGCTCTCCCTCGAGGTCTCT
7._GC-01-020-1-20
TTGTCTTTGGCTCTCCCTCGAGGTCTCT
8._GC-01-020-1-20
TTGTCTTTGGCTCTCCCTCGAGGTCTCT
9._GC-01-020-1-20
TTGTCTTTGGCTCTCCCTCGAGGTCTCT
10._GC-01-020-1-20
TTGTCTTTGGCTCTCCCTCGAGGTCTCT
11._GC-01-020-1-20
TTGTCTTTGGCTCTCCCTCGAGGTCTCT
12._UF_29
_GTCT__CT_CCCTCGAGGTCT_
13._GC-01-020-1-20
TTGTCTTTGGCTCTCCCTCGAGGTCTCT
14._GC-01-020-1-20
TTGTCTTTGGCTCTCCCTCGAGGTCTCT
15._UF_29
_GT___CT_CCCTCGAGGTCTCT
16._UF_29
_GTCT__CT_CCCTCGAGGTCTCT
17._UF_29
_GTCT__CT_CCCTCGAGGTCTCT
18._UF_29
_GTCT__CT_CCCTCGAGGTCTCT
19._UF_29
_GTCT__CT_CCCTCGAGGTCTCT
20._UF_29
_GTCT__CT_CCCTCGAGGTCTCT
21._UF_29
_GTCT__CT_CCCTCGAGGTCTCT
22._UF_29
_GTCT__CT_CCCTCGAGGTCTCT
23._UF_29
_GTCT__CT_CCCTCGAGGTCTCT
24._UF_29
_GTCT__CT_CCCTCGAGGTCTCT
25._UF_29
_GTCT__CT_CCCTCGAGGTCTCT
26._UF_29
_GTCT__CT_CCCTCGAGGTCTCT
27._UF_29
_GTCT__CT_CCCTCGAGGTCTCT
28._UF_29
_GTCT__CT_CCCTCGAGGTCTCT
29._UF_29
_GTCT__CT_CCCTCGAGGTCTCT
 2930313233343536373839404142
_Input profile
ATGGACGGAAGGGGCGCCATATGGAGAT
1._GC-01-020-1-20
ATGGACCCAAGGCCCGGGATATGGAGAT
2._GC-01-020-1-20
ATGGACCCAAGGCCCGGGATATGGAGAT
3._GC-01-020-1-20
ATGGACCCAAGGCCCGGGATATGGAGAT
4._GC-01-020-1-20
ATGGACCCAAGGCCCGGGATATGGAGAT
5._GC-01-020-1-20
ATGGACCCAAGGCCCGGGATATGGAGAT
6._GC-01-020-1-20
ATGGACCCAAGGCCCGGGATATGGAGAT
7._GC-01-020-1-20
ATGGACCCAAGGCCCGGGATATGGAGAT
8._GC-01-020-1-20
ATGGACCCAAGGCCCGGGATATGGAGAT
9._GC-01-020-1-20
ATGGACCCAAGGCCCGGGATATGGAGAT
10._GC-01-020-1-20
ATGGACCCAAGGCCCGGGATATGGAGAT
11._GC-01-020-1-20
ATGGACCCAAGGCCCGGGATATGGAGAT
12._UF_29
__AC_AA_CCCG__AT__AT
13._GC-01-020-1-20
ATGGACCCAAGGCCCGGGATATGGAGAT
14._GC-01-020-1-20
ATGGACCCAAGGCCCGGGATATGGAGAT
15._UF_29
__ACCCAA_CCCG__AT__AT
16._UF_29
__AC_AA_CCCG__AT__AT
17._UF_29
__ACCCAA_CCCG__AT__AT
18._UF_29
__ACCCAA_CCCG__AT__AT
19._UF_29
__ACCCAA_CCCG__AT__AT
20._UF_29
__ACCCAA_CCCG__AT__AT
21._UF_29
__ACCCAA_CCCG__AT__AT
22._UF_29
__ACCCAA_CCCG__AT__AT
23._UF_29
__ACCCAA_CCCG__AT__AT
24._UF_29
__ACCCAA_CCCG__AT__AT
25._UF_29
__ACCCAA_CCCG__AT__AT
26._UF_29
__ACCCAA_CCCG__AT__AT
27._UF_29
__ACCCAA_CCCG__AT__AT
28._UF_29
__ACCCAA_CCCG__AT__AT
29._UF_29
__ACCCAA_CCCG__AT__AT
 4344454647484950515253545556
_Input profile
AGAGAGAGATGGAGACACAGACAGCGAC
1._GC-01-020-1-20
_AGAGAGATCC_ACACAGGTAGCGAC
2._GC-01-020-1-20
CTAGAGAGATCC_ACACAGGTAGCGAC
3._GC-01-020-1-20
CTAGAGAGATCC_ACACAGGTAGCGAC
4._GC-01-020-1-20
CTAGAGAGATCC_ACACAGGTAGCGAC
5._GC-01-020-1-20
CTAGAGAGATCC_ACACAGGTAGCGAC
6._GC-01-020-1-20
CTAGAGAGATCC_ACACAGGTAGCGAC
7._GC-01-020-1-20
CTAGAGAGATCC_ACACAGGTAGCGAC
8._GC-01-020-1-20
CTAGAGAGATCC_ACACAGGTAGCGAC
9._GC-01-020-1-20
CTAGAGAGATCC_ACACAGGTAGCGAC
10._GC-01-020-1-20
CTAGAGAGATCC_ACACAGGTAGCGAC
11._GC-01-020-1-20
CTAGAGAGATCC_ACACAGGTAGCGAC
12._UF_29
___AG____AC___CGAC
13._GC-01-020-1-20
CTAGAG_ATCC_ACACAGGTAGCGAC
14._GC-01-020-1-20
CTAGAG_ATCC_ACACAGGTAGCGAC
15._UF_29
___AG____AC_GT_CGAC
16._UF_29
___AA____AC_GT_CGAC
17._UF_29
___AG____AC_GT_CGAC
18._UF_29
___AG____AC_GT_CGAC
19._UF_29
___AG____AC_GT_CGAC
20._UF_29
___AG____AC_GT_CGAC
21._UF_29
___AG____AC_GT_CGAC
22._UF_29
___AG____AC_GT_CGAC
23._UF_29
___AG____AC_GT_CGAC
24._UF_29
___AG____AC_GT_CGAC
25._UF_29
___AG____AC_GT_CGAC
26._UF_29
___AG____AC_GT_CGAC
27._UF_29
___AG____AC_GT_CGAC
28._UF_29
________AC_GT_CGAC
29._UF_29
________AC_GT_CGAC
 5758596061626364656667686970
_Input profile
GGGGAGAGAACCAGAAAAAAAAACCGAG
1._GC-01-020-1-20
CCCCCTAAAAGGAGTTTTTTTTACCGAA
2._GC-01-020-1-20
CCCCCTAAAAGGAGTTTTTTTTACCGAA
3._GC-01-020-1-20
CCCCCTAAAAGGAGTTTTTTTTACCGAA
4._GC-01-020-1-20
CCCCCTAAAAGGAGTTTTTTTTACCGAA
5._GC-01-020-1-20
CCCCCTAAAAGGAGTTTTTTTTACCGAA
6._GC-01-020-1-20
CCCCCTAAAAGGAGTTTTTTTTACCGAA
7._GC-01-020-1-20
CCCCCTAAAAGGAGTTTTTTTTACCGAA
8._GC-01-020-1-20
CCCCCTAAAAGGAGTTTTTTTTACCGAA
9._GC-01-020-1-20
CCCCCTAAAAGGAGTTTTTTTTACCGAA
10._GC-01-020-1-20
CCCCCTAAAAGGAGTTTTTTTTACCGAA
11._GC-01-020-1-20
CCCCCTAAAAGGAGTTTTTTTTACCGAA
12._UF_29
__CT__GG________
13._GC-01-020-1-20
CCCCCTAAAAGGAGTTTTTTTTACCGAA
14._GC-01-020-1-20
CCCCCTAAAAGGAGTTTTTTTTACCGAA
15._UF_29
__CT__GG________
16._UF_29
__CT__GG________
17._UF_29
__CT__GG________
18._UF_29
__CT__GG________
19._UF_29
__CT__GG________
20._UF_29
__CT__GG________
21._UF_29
__CT__GG________
22._UF_29
__CT__GG________
23._UF_29
__CT__GG________
24._UF_29
__CT__GG________
25._UF_29
__CT__GG________
26._UF_29
__CT__GG________
27._UF_29
__CT__GG________
28._UF_29
__CT__GG________
29._UF_29
__CT__GG________
 7172737475767778798081   
_Input profile
CCAGCGAGCCAGGGGGATAAAGX_XX_XX_X
1._GC-01-020-1-20
GGCTCGAGCCCTGGCCATTTAGX_XX_XX_X
2._GC-01-020-1-20
GGCTCGAGCCCTGGCCATTTAGX_XX_XX_X
3._GC-01-020-1-20
GGCTCGAGCCCTGGCCATTTAGX_XX_XX_X
4._GC-01-020-1-20
GGCTCGAGCCCTGGCCATTTAGX_XX_XX_X
5._GC-01-020-1-20
GGCTCGAGCCCTGGCCATTTAGX_XX_XX_X
6._GC-01-020-1-20
GGCTCGAGCCCTGGCCATTTAGX_XX_XX_X
7._GC-01-020-1-20
GGCTCGAGCCCTGGCCATTTAGX_XX_XX_X
8._GC-01-020-1-20
GGCTCGAGCCCTGGCCATTTAGX_XX_XX_X
9._GC-01-020-1-20
GGCTCGAGCCCTGGCCATTTAGX_XX_XX_X
10._GC-01-020-1-20
GGCTCGAGCCCTGGCCATTTAGX_XX_XX_X
11._GC-01-020-1-20
GGCTCGAGCCCTGGCCATTTAGX_XX_XX_X
12._UF_29
GGCT___CTGG__TT_X_XX_XX_X
13._GC-01-020-1-20
GGCTCGAGCCCTGGCCATTTAGX_XX_XX_X
14._GC-01-020-1-20
GGCTCGAGCCCTGGCCATTTAGX_XX_XX_X
15._UF_29
GGCT___CTGG_ATTTAGX_XX_XX_X
16._UF_29
GGCT___CTGG_ATTTAGX_XX_XX_X
17._UF_29
GGCT___CTGG_ATTTAGX_XX_XX_X
18._UF_29
GGCT___CTGG_ATTTAGX_XX_XX_X
19._UF_29
GGCT___CTGG_ATTTAGX_XX_XX_X
20._UF_29
GGCT___CTGG_ATTTAGX_XX_XX_X
21._UF_29
GGCT___CTGG_ATTTAGX_XX_XX_X
22._UF_29
GGCT___CTGG_ATTTAGX_XX_XX_X
23._UF_29
GGCT___CTGG_ATTTAGX_XX_XX_X
24._UF_29
GGCT___CTGG_ATTTAGX_XX_XX_X
25._UF_29
GGCT___CTGG_ATTTAGX_XX_XX_X
26._UF_29
GGCT___CTGG_ATTTAGX_XX_XX_X
27._UF_29
GGCT___CTGG_ATTTAGX_XX_XX_X
28._UF_29
GGCT___CTGG_ATTTAGX_XX_XX_X
29._UF_29
GGCT___CTGG_ATTTAGX_XX_XX_X

Input profile: UF_29 UF_29_Fld#_20_Plt#_5

 
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USDA-TARS, United States of America
Location: Field: 20, Tree: 5
Notes: TARS_Cacao_collection
 Mars, 2018

1._UF_29 GC-01-020-1-20

54.4 %
79 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

2._UF_29 GC-01-020-1-20

54.4 %
79 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

3._UF_29 GC-01-020-1-20

53.8 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

4._UF_29 GC-01-020-1-20

53.8 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

5._UF_29 GC-01-020-1-20

53.8 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

6._UF_29 GC-01-020-1-20

53.8 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

7._UF_29 GC-01-020-1-20

53.8 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

8._UF_29 GC-01-020-1-20

53.8 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

9._UF_29 GC-01-020-1-20

53.8 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP4
 Mars, 2018

10._UF_29 GC-01-020-1-20

53.8 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

11._UF_29 GC-01-020-1-20

53.8 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

12._UF_29

53.6 %
28 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

13._UF_29 GC-01-020-1-20

53.2 %
79 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

14._UF_29 GC-01-020-1-20

53.2 %
79 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP1
 Mars, 2018

15._UF_29

51.5 %
33 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1115 2
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

16._UF_29

50 %
33 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F454 T8
 Dapeng Zhang, 2016

17._UF_29

50 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1115 6 > FP
 Dapeng Zhang, 2016

18._UF_29

50 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1115 4 > FP
 Dapeng Zhang, 2016

19._UF_29

50 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1115 14 > F
 Dapeng Zhang, 2016

20._UF_29

50 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1115 16
 Dapeng Zhang, 2016

21._UF_29

50 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1115 15
 Dapeng Zhang, 2016

22._UF_29

50 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1115 13
 Dapeng Zhang, 2016

23._UF_29

50 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1115 10
 Dapeng Zhang, 2016

24._UF_29

50 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1115 8
 Dapeng Zhang, 2016

25._UF_29

50 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1115 7
 Dapeng Zhang, 2016

26._UF_29

50 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1115 3
 Dapeng Zhang, 2016

27._UF_29

50 %
34 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

28._UF_29

48.5 %
33 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1115 9 > FP
 Dapeng Zhang, 2016

29._UF_29

48.5 %
33 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1115 12
 Dapeng Zhang, 2016

 

  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1383 20TcSNP1414
21TcSNP1439 22TcSNP144 23TcSNP1442 24TcSNP1458 25TcSNP1484
26TcSNP150 27TcSNP151 28TcSNP1520 29TcSNP154 30TcSNP174
31TcSNP193 32TcSNP226 33TcSNP230 34TcSNP240 35TcSNP242
36TcSNP25 37TcSNP28 38TcSNP316 39TcSNP32 40TcSNP329
41TcSNP364 42TcSNP372 43TcSNP413 44TcSNP418 45TcSNP42
46TcSNP429 47TcSNP430 48TcSNP448 49TcSNP497 50TcSNP521
51TcSNP529 52TcSNP547 53TcSNP560 54TcSNP561 55TcSNP577
56TcSNP591 57TcSNP60 58TcSNP602 59TcSNP619 60TcSNP653
61TcSNP689 62TcSNP723 63TcSNP731 64TcSNP75 65TcSNP751
66TcSNP776 67TcSNP799 68TcSNP823 69TcSNP836 70TcSNP860
71TcSNP872 72TcSNP891 73TcSNP894 74TcSNP899 75TcSNP90
76TcSNP917 77TcSNP929 78TcSNP944 79TcSNP953 80TcSNP994
81TcSNP998